Once network communication is interrupted the issues can remain. Leave the aftermarket stuff disconnected and re-evaluate.I didn't think about that before when I was running the self test but it makes sense now. Are you saying the AMP running boards could be causing the problem? When I left the dealership yesterday and they started acting up, I disconnected them from the OBD port but the problems with the lights and rear cargo window remained. Wouldn't that rule them out?