Are you referring to the Raptor splash screen and start/stop or just the background logo? If it's just the background/wallpaper, you can load that yourself with a USB drive.
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This is one reason why it's recommended to do a Master reset before doing the update.
The update does read the previous settings so if there was a glitch before it might carry over.
^ I would try doing it again. Everyone that I am aware of that updated MFT got the Raptor screen even when they werent getting it before. Plus, within MFT there is no way to change the opening screen so you couldn't just download it.
DesaRaptor, have tried a battery disconnect? It might work. Either that or redo the flash.