If you want to PM me, I'll try to help you.
It's a little hard to start with you because I have no idea what the exact mods your truck has.
As the seats turning off, I pretty sure that's because your battery is weak.
Your battery should be reading 13.7 volts at minimum, when the truck is off.
A whole host of small issue come from a weak battery, loose or corroded connections at the starter or battery terminals.
Improper spark plug gap is a big one too.
Connections to the TB have been an issue as well, from the wire that gets spliced in the PCM plug to the extended TB harness plug.
There are a whole lot of things that need to be check off first, before just making an assumption that Whipple's TB is to blame.
Editing the calibration table for the TB and torque control is not a simple process by any means, not every Tuner even has the files to edit them.
That's why some Tuners say to go to the smaller 65mm TB. There's a lot less flow rate.
No need to edit those files, cheaper for them.
Also Whipple's Tuner travels with a Ford NHRA team along with doing his own onsite Tuning, which is something we could never afford.
Unless your Ken Block backed by Ford, which by the way is who Tunes his Raptors.
I'm waiting for my time to get the new Gen 3 compressor done by him, he's not easily accessible.
And no one else has a Tune for the 2010 1/2 Whippled Raptor besides Whipple and SVC.
HINT, there's a reason for that!!!
Can you spot your Vin# or order, he's got thousands of them on his Laptop and that's just one folder.
View attachment 114076