They asked if it had a tune on it and also said they were also to see the ecu was altered right away when they did the diagnostics. They said they would work with me but they didn't think Ford would void the warranty because of the "chip". (But my truck was out of warranty..just over at 61,*** miles)
But the end result was Ford agreed to rebuild the transmission for an after warranty claim. I had to pay a $1,200 warranty deductible, another $200 something for the diagnostics and it came to around $1,550.
Ive had the truck back for about a week now. I kept it stock for the first few days but last night flashed back to the 93 octane performance tune.