Yes you will.
If you have a tune, for example, that increases the boost of your turbo by any amount above what the manufacturer set then no one would reasonably expect ford to warranty that part. You caused it to exceed its design limits and it failed. That’s on you.
The fact that you have had well-designed tunes for years and have not had any issues means that you have been lucky so far. It does not mean that the manufacturer is required to warrantee your truck that is operating beyond the limits of its design due to your actions.
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If you believe that the limits set by Ford are the “design limits” then you have never heard of the EPA. Again, just because you have a tune does not mean your warranty is void in any way.
There is no “luck” of any kind. It’s a scientific and custom calibrated method of safely improving the driveability and efficiency of the engine. 5Star, for example, started their business by tuning gas motor homes. A motor home is not a sports car meant to go fast, it’s meant to go hundreds of thousands of miles reliably. The same philosophy applies with our trucks.